livecellx.core.sct_operator.SctOperator

class livecellx.core.sct_operator.SctOperator(traj_collection, shape_layer, viewer, operator='connect', magicgui_container=None, sc_operators=None, img_dataset=None, time_span=(0, None), meta=None, uns=None)

Methods

add_mother_daughter_relation()
add_new_sc()	Adds a new single cell to a single cell trajectory.
annotate_click(label)
class2samples_to_annotation_data_structure()
clear_sc_opeartors()
clear_selection()
close()
connect_two_scts()
delete_selected_sct()
disconnect_sct()
edit_sc(cur_sc)
edit_selected_sc()
get_all_scs()	Return all single cell objects in the current trajec_collection
get_meta(key)	Returns meta info.
hide_function_widgets()
load_annotations(annotation_dirs[, classes])
lookup_sc_shape_index(sc)
remove_empty_contour_sct()
remove_sc_operator(sc_operator)
remove_scs(scs)
remove_shape_layer()
restore_shapes_data()
save_annotations(sample_out_dir[, ...])
select_shape(event[, shape_layer])	Select a shape in the shape layer, and update the shape color and status.
selected_scs()
setup_by_timespan(span[, ...])
setup_from_sctc(sctc[, contour_sample_num])
setup_shape_layer(shape_layer)
show_selected_mode_widget()
store_shape_layer_info([update_slice])	Stores the original face colors, properties, single cells, and shape data of the shape layer.
toggle_shapes_text()
update_shape_layer(shape_index, track_id, ...)
update_shape_layer_by_sc(sc)
update_shape_layer_by_track_id(track_id, ...)

Attributes

ADD_MOTHER_DAUGHER_MODE
ANNOTATE_CLICK_MODE
CONNECT_MODE
DELETE_TRAJECTORY_MODE
DISCONNECT_MODE