livecellx.core.SingleCellTrajectoryCollection

class livecellx.core.SingleCellTrajectoryCollection(scts=None)[source]

Represents a collection of single-cell trajectories.

Attributes: - track_id_to_trajectory: A dictionary mapping track IDs to SingleCellTrajectory objects. - _iter_index: An index used for iterating over the track ID to trajectory mapping.

Methods

`add_trajectory`(trajectory)
`filter_trajectories`(filter_func[, inplace])
`filter_trajectories_by_length`([min_length, ...])
`get_all_scs`()
`get_all_tids`()
`get_all_track_ids`()
`get_all_trajectories`()
`get_feature_table`()
`get_max_tid`()
`get_time_span`()
`get_track_ids`()
`get_trajectory`(track_id)
`histogram_traj_length`([ax])
`load_from_json_dict`(json_dict)
`load_from_json_dict_parallel`(json_dict)
`load_from_json_file`(path[, parallel])
`pop_trajectory`(track_id)
`remove_empty_sct`([inplace])
`show_tracks`()	Plot each trajectory as a line with scatter points as one row.
`subset`(track_ids)
`subset_random`(n)
`to_json_dict`([dataset_json_dir])
`write_json`(path[, dataset_json_dir, ...])