General
Installation
API
Classes
livecellx.core.SingleCellStatic
SingleCellStatic
livecellx.core.SingleCellStatic.add_feature
livecellx.core.SingleCellStatic.assign_uuid
livecellx.core.SingleCellStatic.clear_contour_cache
livecellx.core.SingleCellStatic.compute_iomin
livecellx.core.SingleCellStatic.compute_iou
livecellx.core.SingleCellStatic.compute_overlap_mask
livecellx.core.SingleCellStatic.compute_overlap_percent
livecellx.core.SingleCellStatic.compute_regionprops
livecellx.core.SingleCellStatic.copy
livecellx.core.SingleCellStatic.gen_contour_mask
livecellx.core.SingleCellStatic.gen_contour_mask_skimage_deprecated
livecellx.core.SingleCellStatic.gen_skimage_bbox_img_crop
livecellx.core.SingleCellStatic.get_bbox
livecellx.core.SingleCellStatic.get_bbox_from_contour
livecellx.core.SingleCellStatic.get_bbox_on_crop
livecellx.core.SingleCellStatic.get_center
livecellx.core.SingleCellStatic.get_contour
livecellx.core.SingleCellStatic.get_contour_coords_on_crop
livecellx.core.SingleCellStatic.get_contour_coords_on_img_crop
livecellx.core.SingleCellStatic.get_contour_img
livecellx.core.SingleCellStatic.get_contour_label_mask
livecellx.core.SingleCellStatic.get_contour_mask
livecellx.core.SingleCellStatic.get_contour_mask_closed_form
livecellx.core.SingleCellStatic.get_feature_pd_series
livecellx.core.SingleCellStatic.get_img
livecellx.core.SingleCellStatic.get_img_crop
livecellx.core.SingleCellStatic.get_img_shape
livecellx.core.SingleCellStatic.get_label_mask
livecellx.core.SingleCellStatic.get_label_mask_crop
livecellx.core.SingleCellStatic.get_mask
livecellx.core.SingleCellStatic.get_mask_crop
livecellx.core.SingleCellStatic.get_napari_shape_bbox_vec
livecellx.core.SingleCellStatic.get_napari_shape_contour_vec
livecellx.core.SingleCellStatic.get_napari_shape_vec
SingleCellStatic.get_napari_shape_vec()
livecellx.core.SingleCellStatic.get_sc_img
livecellx.core.SingleCellStatic.get_sc_label_mask
livecellx.core.SingleCellStatic.get_sc_mask
livecellx.core.SingleCellStatic.inflate_from_json_dict
livecellx.core.SingleCellStatic.load_from_json_dict
livecellx.core.SingleCellStatic.load_single_cells_json
livecellx.core.SingleCellStatic.load_single_cells_jsons
livecellx.core.SingleCellStatic.sample_contour_point
livecellx.core.SingleCellStatic.segment_by_cellpose
livecellx.core.SingleCellStatic.segment_by_detectron
livecellx.core.SingleCellStatic.show
livecellx.core.SingleCellStatic.show_contour_img
livecellx.core.SingleCellStatic.show_contour_mask
livecellx.core.SingleCellStatic.show_label_mask
livecellx.core.SingleCellStatic.show_mask
livecellx.core.SingleCellStatic.show_panel
livecellx.core.SingleCellStatic.show_whole_img
livecellx.core.SingleCellStatic.show_whole_mask
livecellx.core.SingleCellStatic.to_json_dict
livecellx.core.SingleCellStatic.update_bbox
livecellx.core.SingleCellStatic.update_contour
livecellx.core.SingleCellStatic.update_regionprops
livecellx.core.SingleCellStatic.update_sc_mask_by_crop
livecellx.core.SingleCellStatic.write_json
livecellx.core.SingleCellStatic.write_single_cells_json
livecellx.core.SingleCellStatic.AUTOENCODER_FEATURE_KEY
livecellx.core.SingleCellStatic.CACHE_IMG_CROP_KEY
livecellx.core.SingleCellStatic.HARALICK_FEATURE_KEY
livecellx.core.SingleCellStatic.MORPHOLOGY_FEATURE_KEY
livecellx.core.SingleCellStatic.id_generator
livecellx.core.SingleCellTrajectory
livecellx.core.SingleCellTrajectoryCollection
livecellx.core.datasets.LiveCellImageDataset
livecellx.core.datasets.SingleImageDataset
livecellx.core.io_utils.LiveCellEncoder
livecellx.core.napari_visualizer.NapariVisualizer
livecellx.core.sc_key_manager.SingleCellMetaKeyManager
livecellx.core.sc_seg_operator.ScSegOperator
livecellx.core.sct_operator.SctOperator
Quick Start Guide
Gallery
Livecellx Tutorials
livecellx
Classes
livecellx.core.SingleCellStatic
livecellx.core.SingleCellStatic.get_napari_shape_vec
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livecellx.core.SingleCellStatic.get_napari_shape_vec
SingleCellStatic.
get_napari_shape_vec
(
coords
)
[source]