livecellx is an end-to-end system for helping users extracting single-cell trajectories from long live-cell imaging data and computing as well as analyzing single-cell features in latent space.
[More docs Coming soon!!! readthedocs website still underconstruction, suggestions welcome!]
Please see our manuscript [insert citation here] to learn more.
Load large livecell imaging datasets on disk
- Segment and track cells in live-cell imaging data
with any popular tools such as OpenCV, SORT, or btrack.
with our own deep learning-based segmentation model
Correct single cell segmentation on single-cell level in our Napari UI operator
Generate cell features
Analyze and visualize single-cell trajectories.
Getting Started with livecell
Browse the [tutorials/index](<insert tutorials/index link here>) and [examples/index](<insert examples/index link here>).
Contribute to the project on github.