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General

  • Installation
  • API
  • Classes
  • Quick start guide

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  • Livecellx Tutorials
    • Saving & Loading single cells and trajectory data
    • Visualizing and analyzing EBSS data
    • Editing SingleCellStatic Objects Using a Viewer
    • Create Napari UI for editing SingleCellTrajectoryCollection (SCTC)
    • Annotation by clicking single cells in the Napari UI
    • Annotate Mitosis Events (and other cell events)
    • Segment A549 cells using a trained cellpose
    • Train a cellpose to segment A549 cells
    • Create UMAP of single cell features
    • Create UMAP of single cell features on EBSS starvation data
    • Display attributes of single cells and trajectory
livecellx
  • Livecellx Tutorials
  • Edit on GitHub

Livecellx Tutorials

This section contains various tutorials showcasing live cell image analysis with livecellx.

  • Saving & Loading single cells and trajectory data
  • Visualizing and analyzing EBSS data
  • Editing SingleCellStatic Objects Using a Viewer
  • Create Napari UI for editing SingleCellTrajectoryCollection (SCTC)
  • Annotation by clicking single cells in the Napari UI
  • Annotate Mitosis Events (and other cell events)
  • Segment A549 cells using a trained cellpose
  • Train a cellpose to segment A549 cells
  • Create UMAP of single cell features
  • Create UMAP of single cell features on EBSS starvation data
  • Display attributes of single cells and trajectory
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© Copyright 2022, Ke Ni, Dante Poe, Yajushi Khurana, Weikang Wang, and Jianhua Xing. Revision 25074ef1.