livecellx.core.sct_operator.SctOperator

class livecellx.core.sct_operator.SctOperator(traj_collection, shape_layer, viewer, operator='connect', magicgui_container=None, sc_operators=None, img_dataset=None, time_span=(0, None), meta=None, uns=None)[source]

Methods

`add_mother_daughter_relation`()
`add_new_sc`()	Adds a new single cell to a single cell trajectory.
`annotate_click`(label)
`clear_sc_opeartors`()
`clear_selection`()
`close`()
`connect_two_scts`()
`delete_selected_sct`()
`disconnect_sct`()
`edit_sc`(cur_sc)
`edit_selected_sc`()
`get_all_scs`()	Return all single cell objects in the current trajec_collection
`hide_function_widgets`()
`lookup_sc_shape_index`(sc)	rtype `Optional`[`int`]
`remove_empty_contour_sct`()
`remove_sc_operator`(sc_operator)
`remove_scs`(scs)
`remove_shape_layer`()
`restore_shapes_data`()
`save_annotations`(sample_out_dir[, ...])
`select_shape`(event[, shape_layer])	Select a shape in the shape layer, and update the shape color and status.
`selected_scs`()
`setup_by_timespan`(span[, contour_sample_num])
`setup_from_sctc`(sctc[, contour_sample_num])
`setup_shape_layer`(shape_layer)
`show_selected_mode_widget`()
`store_shape_layer_info`([update_slice])	Stores the original face colors, properties, single cells, and shape data of the shape layer.
`toggle_shapes_text`()
`update_shape_layer`(shape_index, track_id, ...)
`update_shape_layer_by_sc`(sc)
`update_shape_layer_by_track_id`(track_id, ...)

Attributes

`ADD_MOTHER_DAUGHER_MODE`
`ANNOTATE_CLICK_MODE`
`CONNECT_MODE`
`DELETE_TRAJECTORY_MODE`
`DISCONNECT_MODE`